40S ribosomal protein S23

Protein-coding gene in the species Homo sapiens
RPS23
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

4CXG, 4CXH, 4UG0, 4V6X, 5A2Q, 5AJ0, 4KZY, 4UJC, 4KZX, 4UJE, 4UJD, 4KZZ, 5FLX, 4D61, 4V5Z

Identifiers
AliasesRPS23, S23, ribosomal protein S23, MABAS, PAMAS, MCINS, BTDD, uS12
External IDsOMIM: 603683; MGI: 1913725; HomoloGene: 799; GeneCards: RPS23; OMA:RPS23 - orthologs
Gene location (Human)
Chromosome 5 (human)
Chr.Chromosome 5 (human)[1]
Chromosome 5 (human)
Genomic location for RPS23
Genomic location for RPS23
Band5q14.2Start82,273,320 bp[1]
End82,278,396 bp[1]
Gene location (Mouse)
Chromosome 13 (mouse)
Chr.Chromosome 13 (mouse)[2]
Chromosome 13 (mouse)
Genomic location for RPS23
Genomic location for RPS23
Band13|13 C3Start91,071,077 bp[2]
End91,073,069 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • skin of hip

  • lactiferous duct

  • parietal pleura

  • lower lobe of lung

  • skin of thigh

  • visceral pleura

  • trabecular bone

  • superficial temporal artery

  • mucosa of urinary bladder

  • germinal epithelium
Top expressed in
  • epiblast

  • uterus

  • ovary

  • urinary bladder

  • yolk sac

  • embryo

  • embryo

  • ventricular zone

  • ganglionic eminence

  • zone of skin
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • protein binding
  • RNA binding
  • structural constituent of ribosome
Cellular component
  • cytosol
  • ribosome
  • membrane
  • intracellular anatomical structure
  • small ribosomal subunit
  • nucleoplasm
  • cytosolic small ribosomal subunit
  • cytoplasm
  • endoplasmic reticulum
  • rough endoplasmic reticulum
  • polysomal ribosome
  • synapse
Biological process
  • viral transcription
  • SRP-dependent cotranslational protein targeting to membrane
  • translational initiation
  • nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
  • rRNA processing
  • protein biosynthesis
  • stress granule assembly
  • maintenance of translational fidelity
  • cytoplasmic translation
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6228

66475

Ensembl

ENSG00000186468

ENSMUSG00000049517

UniProt

P62266

P62267

RefSeq (mRNA)

NM_001025

NM_024175

RefSeq (protein)

NP_001016

NP_077137

Location (UCSC)Chr 5: 82.27 – 82.28 MbChr 13: 91.07 – 91.07 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

40S ribosomal protein S23 is a protein that in humans is encoded by the RPS23 gene.[5][6]

Ribosomes, the organelles that catalyze protein synthesis, consist of a small 40S subunit and a large 60S subunit. Together these subunits are composed of 4 RNA species and approximately 80 structurally distinct proteins. This gene encodes a ribosomal protein that is a component of the 40S subunit. The protein belongs to the S12P family of ribosomal proteins. It is located in the cytoplasm. The protein shares significant amino acid similarity with S. cerevisiae ribosomal protein S28. As is typical for genes encoding ribosomal proteins, there are multiple processed pseudogenes of this gene dispersed through the genome.[6]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000186468 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000049517 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Kenmochi N, Kawaguchi T, Rozen S, Davis E, Goodman N, Hudson TJ, Tanaka T, Page DC (Aug 1998). "A map of 75 human ribosomal protein genes". Genome Res. 8 (5): 509–23. doi:10.1101/gr.8.5.509. PMID 9582194.
  6. ^ a b "Entrez Gene: RPS23 ribosomal protein S23".

Further reading

  • Wool IG, Chan YL, Glück A (1996). "Structure and evolution of mammalian ribosomal proteins". Biochem. Cell Biol. 73 (11–12): 933–47. doi:10.1139/o95-101. PMID 8722009.
  • Kato S, Sekine S, Oh SW, et al. (1995). "Construction of a human full-length cDNA bank". Gene. 150 (2): 243–50. doi:10.1016/0378-1119(94)90433-2. PMID 7821789.
  • Robertson NG, Khetarpal U, Gutiérrez-Espeleta GA, et al. (1995). "Isolation of novel and known genes from a human fetal cochlear cDNA library using subtractive hybridization and differential screening". Genomics. 23 (1): 42–50. doi:10.1006/geno.1994.1457. PMID 7829101.
  • Hori N, Murakawa K, Matoba R, et al. (1993). "A cDNA sequence of human ribosomal protein, homologue of yeast S28". Nucleic Acids Res. 21 (18): 4394. doi:10.1093/nar/21.18.4394. PMC 310080. PMID 8415000.
  • Vladimirov SN, Ivanov AV, Karpova GG, et al. (1996). "Characterization of the human small-ribosomal-subunit proteins by N-terminal and internal sequencing, and mass spectrometry". Eur. J. Biochem. 239 (1): 144–9. doi:10.1111/j.1432-1033.1996.0144u.x. PMID 8706699.
  • Bonaldo MF, Lennon G, Soares MB (1997). "Normalization and subtraction: two approaches to facilitate gene discovery". Genome Res. 6 (9): 791–806. doi:10.1101/gr.6.9.791. PMID 8889548.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Ota T, Suzuki Y, Nishikawa T, et al. (2004). "Complete sequencing and characterization of 21,243 full-length human cDNAs". Nat. Genet. 36 (1): 40–5. doi:10.1038/ng1285. PMID 14702039.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–7. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.
  • Andersen JS, Lam YW, Leung AK, et al. (2005). "Nucleolar proteome dynamics". Nature. 433 (7021): 77–83. Bibcode:2005Natur.433...77A. doi:10.1038/nature03207. PMID 15635413. S2CID 4344740.
  • Yu Y, Ji H, Doudna JA, Leary JA (2005). "Mass spectrometric analysis of the human 40S ribosomal subunit: native and HCV IRES-bound complexes". Protein Sci. 14 (6): 1438–46. doi:10.1110/ps.041293005. PMC 2253395. PMID 15883184.


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Proteins
Initiation factor
Bacterial
Mitochondrial
Archaeal
  • aIF1
  • aIF2
  • aIF5
  • aIF6
Eukaryotic
eIF1
eIF2
eIF3
eIF4
eIF5
eIF6
Elongation factor
Bacterial/​Mitochondrial
Archaeal/​Eukaryotic
Release factor
Ribosomal Proteins
Cytoplasmic
60S subunit
40S subunit
Mitochondrial
39S subunit
28S subunit
Other concepts
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