Protein-coding gene in the species Homo sapiens
IFT80 |
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Identifiers |
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Aliases | IFT80, ATD2, SRTD2, WDR56, intraflagellar transport 80, FAP167 |
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External IDs | OMIM: 611177; MGI: 1915509; HomoloGene: 12253; GeneCards: IFT80; OMA:IFT80 - orthologs |
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Gene location (Human) |
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| Chr. | Chromosome 3 (human)[1] |
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| Band | 3q25.33 | Start | 160,256,986 bp[1] |
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End | 160,399,880 bp[1] |
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Gene location (Mouse) |
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| Chr. | Chromosome 3 (mouse)[2] |
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| Band | 3|3 E1 | Start | 68,799,832 bp[2] |
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End | 68,911,903 bp[2] |
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RNA expression pattern |
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Bgee | Human | Mouse (ortholog) |
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Top expressed in | - epithelium of colon
- endothelial cell
- bronchial epithelial cell
- mucosa of paranasal sinus
- Brodmann area 23
- corpus callosum
- germinal epithelium
- external globus pallidus
- visceral pleura
- Brodmann area 46
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| Top expressed in | - spermatocyte
- olfactory epithelium
- spermatid
- interventricular septum
- Epithelium of choroid plexus
- thymus
- pituitary gland
- seminiferous tubule
- neural layer of retina
- pineal gland
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| More reference expression data |
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BioGPS | |
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Gene ontology |
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Molecular function | | Cellular component | - cytoplasm
- ciliary tip
- cell projection
- cytoskeleton
- cilium
- centrosome
- intraciliary transport particle B
| Biological process | - intraciliary transport involved in cilium assembly
- cilium assembly
- osteoblast differentiation
- chondrocyte differentiation
- smoothened signaling pathway
- positive regulation of smoothened signaling pathway
- negative regulation of epithelial cell proliferation
- bone morphogenesis
- non-motile cilium assembly
- negative regulation of non-canonical Wnt signaling pathway
| Sources:Amigo / QuickGO |
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Orthologs |
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Species | Human | Mouse |
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Entrez | | |
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Ensembl | | |
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UniProt | | |
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RefSeq (mRNA) | |
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NM_020800 NM_001190241 NM_001190242 |
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RefSeq (protein) | |
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NP_001177170 NP_001177171 NP_065851 |
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Location (UCSC) | Chr 3: 160.26 – 160.4 Mb | Chr 3: 68.8 – 68.91 Mb |
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PubMed search | [3] | [4] |
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Wikidata |
View/Edit Human | View/Edit Mouse |
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Intraflagellar transport protein 80 homolog (IFT80), also known as WD repeat-containing protein 56, is a protein that in humans is encoded by the IFT80 gene.[5][6]
Function
IFT80 is part of the intraflagellar transport complex B and is necessary for the function of motile and sensory cilia.[5]
Clinical significance
Mutations in the IFT80 gene are associated with asphyxiating thoracic dysplasia.[6]
References
- ^ a b c GRCh38: Ensembl release 89: ENSG00000068885 – Ensembl, May 2017
- ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000027778 – Ensembl, May 2017
- ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
- ^ a b "Entrez Gene: intraflagellar transport 80 homolog (Chlamydomonas)".
- ^ a b Beales PL, Bland E, Tobin JL, Bacchelli C, Tuysuz B, Hill J, Rix S, Pearson CG, Kai M, Hartley J, Johnson C, Irving M, Elcioglu N, Winey M, Tada M, Scambler PJ (June 2007). "IFT80, which encodes a conserved intraflagellar transport protein, is mutated in Jeune asphyxiating thoracic dystrophy". Nat. Genet. 39 (6): 727–9. doi:10.1038/ng2038. PMID 17468754. S2CID 8920064.
Further reading
- Nakayama M, Kikuno R, Ohara O (2002). "Protein-protein interactions between large proteins: two-hybrid screening using a functionally classified library composed of long cDNAs". Genome Res. 12 (11): 1773–84. doi:10.1101/gr.406902. PMC 187542. PMID 12421765.
- Huang W, Kane JK, Li MD (2008). "Identification and characterization of a long isoform of human IFT80, IFT80-L". Biochem. Biophys. Res. Commun. 373 (4): 653–8. doi:10.1016/j.bbrc.2008.06.085. PMID 18601909.
- Muzny DM, Scherer SE, Kaul R, et al. (2006). "The DNA sequence, annotation and analysis of human chromosome 3". Nature. 440 (7088): 1194–8. Bibcode:2006Natur.440.1194M. doi:10.1038/nature04728. PMID 16641997.
- Strausberg RL, Feingold EA, Grouse LH, et al. (2002). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
- Nagase T, Kikuno R, Ishikawa KI, et al. (2000). "Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro". DNA Res. 7 (1): 65–73. doi:10.1093/dnares/7.1.65. PMID 10718198.
This article incorporates text from the United States National Library of Medicine, which is in the public domain.
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