ODF1

Protein-coding gene in the species Homo sapiens
ODF1
Identifiers
AliasesODF1, CT133, HSPB10, ODF, ODF2, ODF27, ODFP, ODFPG, ODFPGA, ODFPGB, RT7, SODF, outer dense fiber of sperm tails 1
External IDsOMIM: 182878; MGI: 97424; HomoloGene: 7456; GeneCards: ODF1; OMA:ODF1 - orthologs
Gene location (Human)
Chromosome 8 (human)
Chr.Chromosome 8 (human)[1]
Chromosome 8 (human)
Genomic location for ODF1
Genomic location for ODF1
Band8q22.3Start102,551,589 bp[1]
End102,561,018 bp[1]
Gene location (Mouse)
Chromosome 15 (mouse)
Chr.Chromosome 15 (mouse)[2]
Chromosome 15 (mouse)
Genomic location for ODF1
Genomic location for ODF1
Band15 B3.1|15 15.14 cMStart38,219,447 bp[2]
End38,226,979 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • sperm

  • right testis

  • left testis

  • testicle

  • gonad

  • bronchial epithelial cell

  • tail of epididymis

  • nucleus accumbens

  • putamen

  • caudate nucleus
Top expressed in
  • seminiferous tubule

  • spermatid

  • spermatocyte

  • embryo

  • secondary oocyte

  • primary oocyte

  • white adipose tissue

  • skeletal muscle tissue

  • islet of Langerhans

  • adrenal gland
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
  • protein binding
  • protein domain specific binding
Cellular component
  • nucleus
  • outer dense fiber
Biological process
  • multicellular organism development
  • cell differentiation
  • spermatogenesis
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

4956

18285

Ensembl

ENSG00000155087

ENSMUSG00000061923

UniProt

Q14990

Q61999

RefSeq (mRNA)

NM_024410

NM_008757

RefSeq (protein)

NP_077721

NP_032783

Location (UCSC)Chr 8: 102.55 – 102.56 MbChr 15: 38.22 – 38.23 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Outer dense fiber protein 1 is a protein that in humans is encoded by the ODF1 gene.[5][6]

The outer dense fibers are cytoskeletal structures that surround the axoneme in the middle piece and principal piece of the sperm tail. The fibers function in maintaining the elastic structure and recoil of the sperm tail as well as in protecting the tail from shear forces during epididymal transport and ejaculation. Defects in the outer dense fibers lead to abnormal sperm morphology and infertility. The human outer dense fibers contains at least 10 major proteins and this gene encodes the main protein.[6]

References

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000155087 – Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000061923 – Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ Gastmann O, Burfeind P, Gunther E, Hameister H, Szpirer C, Hoyer-Fender S (Mar 1994). "Sequence, expression, and chromosomal assignment of a human sperm outer dense fiber gene". Mol Reprod Dev. 36 (4): 407–418. doi:10.1002/mrd.1080360402. PMID 8305202. S2CID 2447785.
  6. ^ a b "Entrez Gene: ODF1 outer dense fiber of sperm tails 1".

Further reading

  • Kierszenbaum AL (2002). "Keratins: unraveling the coordinated construction of scaffolds in spermatogenic cells". Mol. Reprod. Dev. 61 (1): 1–2. doi:10.1002/mrd.1124. PMID 11774369. S2CID 28475473.
  • Henkel R, Stalf T, Miska W (1992). "Isolation and partial characterization of the outer dense fiber proteins from human spermatozoa". Biol. Chem. Hoppe-Seyler. 373 (8): 685–9. doi:10.1515/bchm3.1992.373.2.685. PMID 1418683.
  • Hofferbert S, Burfeind P, Hoyer-Fender S, et al. (1994). "A homozygous deletion of 27 basepairs in the coding region of the human outer dense fiber protein gene does not result in a pathologic phenotype". Hum. Mol. Genet. 2 (12): 2167–2170. doi:10.1093/hmg/2.12.2167. PMID 8111388.
  • Burmester S, Hoyer-Fender S (1997). "Transcription and translation of the outer dense fiber gene (Odf1) during spermiogenesis in the rat. A study by in situ analyses and polysome fractionation". Mol. Reprod. Dev. 45 (1): 10–20. doi:10.1002/(SICI)1098-2795(199609)45:1<10::AID-MRD2>3.0.CO;2-V. PMID 8873064. S2CID 26075182.
  • Shao X, van der Hoorn FA (1997). "Self-interaction of the major 27-kilodalton outer dense fiber protein is in part mediated by a leucine zipper domain in the rat". Biol. Reprod. 55 (6): 1343–1350. doi:10.1095/biolreprod55.6.1343. PMID 8949892.
  • Shao X, Tarnasky HA, Schalles U, et al. (1997). "Interactional cloning of the 84-kDa major outer dense fiber protein Odf84. Leucine zippers mediate associations of Odf84 and Odf27". J. Biol. Chem. 272 (10): 6105–6113. doi:10.1074/jbc.272.10.6105. PMID 9045620.
  • Shao X, Tarnasky HA, Lee JP, et al. (1999). "Spag4, a novel sperm protein, binds outer dense-fiber protein Odf1 and localizes to microtubules of manchette and axoneme". Dev. Biol. 211 (1): 109–123. doi:10.1006/dbio.1999.9297. PMID 10373309.
  • Petersen C, Füzesi L, Hoyer-Fender S (1999). "Outer dense fibre proteins from human sperm tail: molecular cloning and expression analyses of two cDNA transcripts encoding proteins of approximately 70 kDa". Mol. Hum. Reprod. 5 (7): 627–635. doi:10.1093/molehr/5.7.627. PMID 10381817.
  • Shao X, Xue J, van der Hoorn FA (2001). "Testicular protein Spag5 has similarity to mitotic spindle protein Deepest and binds outer dense fiber protein Odf1". Mol. Reprod. Dev. 59 (4): 410–416. doi:10.1002/mrd.1047. PMID 11468777. S2CID 13590694.
  • Strausberg RL, Feingold EA, Grouse LH, et al. (2003). "Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences". Proc. Natl. Acad. Sci. U.S.A. 99 (26): 16899–16903. Bibcode:2002PNAS...9916899M. doi:10.1073/pnas.242603899. PMC 139241. PMID 12477932.
  • Zarsky HA, Tarnasky HA, Cheng M, van der Hoorn FA (2003). "Novel RING finger protein OIP1 binds to conserved amino acid repeats in sperm tail protein ODF1". Biol. Reprod. 68 (2): 543–552. doi:10.1095/biolreprod.102.009076. PMC 3158802. PMID 12533418.
  • Bhullar B, Zhang Y, Junco A, et al. (2003). "Association of kinesin light chain with outer dense fibers in a microtubule-independent fashion". J. Biol. Chem. 278 (18): 16159–16168. doi:10.1074/jbc.M213126200. PMC 3178653. PMID 12594206.
  • Gerhard DS, Wagner L, Feingold EA, et al. (2004). "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)". Genome Res. 14 (10B): 2121–2127. doi:10.1101/gr.2596504. PMC 528928. PMID 15489334.


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